rs38388928 SNP Detail

Summary

• ID
  rs38388928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127504470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTCCT GGTCCAGGAA
  AGAAGACGAT GGAGAGACGC CGAATCTGAG GCCTTGGCTC CCGTGTTTGG GACCAGGAGG
  GAAGGAGAGA AGATAGATTT CGCTGAGACA CTTGCCCGGG TCCCTTTGTG GGTCAGAATG
  GGTCCCGATG AGAACCTGAG TGTGAGAGTG AAACTACGGA GTATCATTTG TAGCTTTGTT
  Y
  CTCAAGACTT GCCATGAGAT TTAAGTAGAG CGCCTGTGTG GAAATTGTTA ATTGTAGCTA
  GTCAGATCGA AGACTATTGA CAGCATTTTG AGTTTATGTG TTTGTTTCTT TATATCTACT
  GTGTATCTGT GTCTGTGGAT TGTATCCGAG TCCTTGTGTG TGTATTTTAA AATACATACA
  TTAGGGGAAA AAAAATACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50947335	NES14150901	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38388928					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947335	NES14150901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127504470 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	within coordinates
Nab2	Ngfi-A binding protein 2	1898 bp upstream
Rr369095	regulatory region 369095	within coordinates
Rr440991	regulatory region 440991	1980 bp distal
Rr440992	regulatory region 440992	1447 bp distal
Rr440993	regulatory region 440993	1680 bp proximal
Rr440994	regulatory region 440994	1822 bp proximal
Tssr96239	transcription start site region 96239	1459 bp downstream
Tssr96240	transcription start site region 96240	1427 bp downstream
Tssr96241	transcription start site region 96241	192 bp downstream
Tssr99813	transcription start site region 99813	1978 bp upstream
Tssr99814	transcription start site region 99814	1855 bp upstream
Tssr99815	transcription start site region 99815	1784 bp upstream
Tssr99816	transcription start site region 99816	1664 bp upstream
Tssr99817	transcription start site region 99817	991 bp upstream
Tssr99818	transcription start site region 99818	936 bp upstream
Tssr99819	transcription start site region 99819	12 bp upstream
Tssr99820	transcription start site region 99820	271 bp downstream