rs38383811 SNP Detail

Summary

• ID
  rs38383811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77590732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATAGAAC TCTCAGCTCC
  TCCTGCTCCA TGTCTGCCTG GATGCTGCCA TGCTCTTGGC TTGATGATAA TGGACTGCAC
  CTTTGAACCT GTAAGCCAGC CCCAATTAAA TGTTGTCCTT TATAAGACTT GCCAAGGTTA
  TGGTGTCTGT TCACAGCAGT AAAACCCTAA GACAGCCACC AGAGTGTGGT TATCTGTCAA
  R
  ACACTCGCCC AATACAAAGC TAATTGTTGG TGGCCCCAAG CAGACAGCAG CAGGCAGAGC
  CAAAGCGCTC TCCAGAAGGC TCTCCCGCGC ACTCTGGCTC ACTACTCTGA CTAACTCCTA
  CCATCTCCAG ATGCCTAGGG CTTGGACACT CAGAGCTGTC ATCAGACTGT GCCAGGGTCC
  AGTAGGCTTA CTCACTTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50501574	NES13695671	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38383811					SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50501574	NES13695671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77590732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			490 bp distal
Rr541132	regulatory region 541132			436 bp distal
Rr541133	regulatory region 541133			1903 bp proximal