About   Help   FAQ
rs38383811 SNP Detail
Summary
  • ID
    rs38383811
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr18:77590732 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATATAGAAC TCTCAGCTCC
    TCCTGCTCCA TGTCTGCCTG GATGCTGCCA TGCTCTTGGC TTGATGATAA TGGACTGCAC
    CTTTGAACCT GTAAGCCAGC CCCAATTAAA TGTTGTCCTT TATAAGACTT GCCAAGGTTA
    TGGTGTCTGT TCACAGCAGT AAAACCCTAA GACAGCCACC AGAGTGTGGT TATCTGTCAA
    R
    ACACTCGCCC AATACAAAGC TAATTGTTGG TGGCCCCAAG CAGACAGCAG CAGGCAGAGC
    CAAAGCGCTC TCCAGAAGGC TCTCCCGCGC ACTCTGGCTC ACTACTCTGA CTAACTCCTA
    CCATCTCCAG ATGCCTAGGG CTTGGACACT CAGAGCTGTC ATCAGACTGT GCCAGGGTCC
    AGTAGGCTTA CTCACTTCGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50501574 NES13695671 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G A A G A A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs38383811 SNP G G G G G G A G G A A G A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50501574 NES13695671 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:77590732 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Intron
Noncoding-Transcript-Variant
Cpgi10275 CpG island 10275 490 bp distal
Rr541132 regulatory region 541132 436 bp distal
Rr541133 regulatory region 541133 1903 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory