rs38378090 SNP Detail

Summary

• ID
  rs38378090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108384918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCAGAA CTTATCGTGT
  ATGTCTGGCA AGAATATAAT ATCAACTTGG TGTGCTCTTG TGAGAATGAG ATACAATATT
  TATTTGAAAC ATTCAGTATA GTACCTAGCA CACAGCAGGA GGTTCAAATG TGGCAGCCTC
  TACCGGTCTG CAGACTAGTG TCTCAGACAT TGCTGGGCCT TTGATGCTGG TATTAACGAC
  Y
  AGCACCTAGT TACCAATTTT TTGAGTTAGT ACTTGAGCTC TGAGACTCAG AAGGATAAAA
  TGGCTAAAGA TTAAAAATAA AGTCTTAGCC GGGGCAGGGA AGGGACTTCG CGGGGCCTGG
  AGGGAACATG AATGGTTCAA GAGAGGAGCT GAGAGGCCAG AGGAAGGCGC AGTTATGGAT
  AGGATAGGGA TAGGATTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51815287	NES14769727	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38378090					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51815287	NES14769727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108384918 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636092	regulatory region 636092	50 bp distal
Rr636093	regulatory region 636093	120 bp proximal
Rr636094	regulatory region 636094	153 bp proximal
Rr636095	regulatory region 636095	381 bp proximal