rs38376899 SNP Detail

Summary

• ID
  rs38376899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97444575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCACTAG GGGTAAAGTT
  CCAGCTATAG TGGAGCCTGT GATGCCTGTC CCTACCATAA TTAGGGGGGA AGTTCCAGCT
  ACCGCAGAGC TGGTGGTGCC TGTCGCCACC AACAGTGGAA TGACAATGGA GACAGCTTAC
  TGCACACTTG GAAGCCCAGA ATCTAGATTT AAGTGAGCCA CACCCTTCTT TGACATTCTA
  R
  ATGAACACTT GAGGGATAAC AGGCACAAGG ACTTAAAGGA GTGGGTTCTC CAGTGTAAAC
  AATTAAGTAG CAACTAAGTA CCTGTAAAAA GGAACCCAGT ATAGTGGCCA GATGGCTAAT
  GAGGACATTC TGTTGGCTGG AATCCATGGT AATCTCCTCT GGTGGGTCCC CAAAAGCAAC
  ACCATTCTGC TTGTTTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ
ss50997912	NES13922644	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ
rs38376899					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50997912	NES13922644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97444575 () rs orientation: forward

Symbol	Name	Function Class
Rr581511	regulatory region 581511	1379 bp distal
Rr581512	regulatory region 581512	within coordinates
Rr581513	regulatory region 581513	570 bp proximal