rs38372419 SNP Detail

Summary

• ID
  rs38372419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69768471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGTGGG TTCACTCACA
  AGTGCAGGGA ATTCTTTTGC AGACGAATGG CTGGAGGGCA AATTGGGAAA GGGGGCCGGC
  AGTCGGCGGG GTGCCGCAGA GACGCACAGA GCCGCTCTGG GGCTAGCGTG CCTTGCGCGC
  AGCATCTTCG CTGGAAACCC GCAGCCAGAC CTTGATCGAT CTCTTTCGTC TTCATCCTGG
  R
  CAATGCTTGC ATTTGACTCT GTGGTTGGGC GCTAAGGGCG CACAGGGTCT GGAGGCTCCT
  CATCCTGCAT ATTCAACCGA GATTTTTTTT TTTTTCTGTC CAAGATCTAG GGGCGTCCGG
  GGACGGAAGC CTCTCGATTA ATGAACATTT GGGCAGCATC TGCCATTCAG CTTCCACTCC
  AGGAGGGGGA GGCATCGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50977782	NES13927085	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38372419					SNP	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977782	NES13927085	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69768471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	within coordinates
Rr578229	regulatory region 578229	1227 bp distal
Rr578230	regulatory region 578230	708 bp distal
Rr578231	regulatory region 578231	854 bp distal
Rr578232	regulatory region 578232	805 bp distal
Rr578233	regulatory region 578233	175 bp proximal
Rr578234	regulatory region 578234	293 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Coding-NonSynonymous
Tssr903	transcription start site region 903	1274 bp upstream
Tssr33558	transcription start site region 33558	1237 bp upstream
Tssr33559	transcription start site region 33559	236 bp downstream