rs38370875 SNP Detail

Summary

• ID
  rs38370875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8631105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACACAAAC CTTGGCCTGA
  GACTCAGTTA ACTAATTTCC ATCTTCAGGG CACCTCCAGC AATGGCTACA GCTCACAGAG
  GTACTCAAAA CGGCACATGC TGTCTGTCTC CCTCAACCGA GAAGCAGCTT GGCTATTTCA
  GAAATCAGAC TGAAGCAAGG TGCCTTCTGG TGTCTGCCGG AGGGTTCCCT TTAAGTCCCA
  Y
  GGGCCAGGAG CCATCTGCGG TTTCTCCTTT CACCCTTCAA AGACGCAGGC CCACAGGAGG
  TCATACCCAG GCCCAGTCTC TCTACCATTA CAATCACTGC CTTTCCTAGC TCTTCCTGTC
  AAAGGCTAGG TCCTTCCTTT CCCTTTCCCT TTCCCCTTCC CTTCTCCCTT CCCTTCCCTT
  CCCTTCATGG GCTTGAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51549033	NES14865654	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38370875					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51549033	NES14865654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8631105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			872 bp upstream
Rr626420	regulatory region 626420			421 bp proximal
Rr626421	regulatory region 626421			852 bp proximal