rs38363664 SNP Detail

Summary

• ID
  rs38363664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113697442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTTGTG GCTTCTGCAC
  ACCGGTCACA TAGAGACCTG CTTCTGGGGT GTTCTCGAAA AAGGGCTGCA CTGCCATCCC
  CAGGAGCAAG TGTCGGGAAA GGTGCACCTG GTGGTTACAC CTTACTGCTT GTCTGTGTCT
  TGCTTGCGTT TGCTGGTTGA TTTTGTCTTA TACTGTTGGG CATAGTCCCC AGGGCCTTGT
  W
  TTTGGTAGGC AGTTCTCACT GAGCCATTCT CCAAGCCCGT TCTGGTGTTT GTTAACCTGG
  CAGCTTTGCC TCTCTGTTCT CTGGCAGGTA TCAAGGCTCT ATCTAGCACA AGGAATGCCC
  ATTGTGGAGA TGCAGATGAG ATAGACCTGG TATAGGAGTC CTGCAGTATA GCTTTGACAG
  GAGACAGCCC TTTGGATACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51839635	NES14764968	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	A		A
ss321911651	CHEV_6_113670475	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38363664					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839635	NES14764968	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113697442 () rs orientation: forward

Symbol	Name	Function Class
Ghrl	ghrelin	601 bp upstream
Gm44033	predicted gene, 44033	1203 bp downstream
Rr636588	regulatory region 636588	627 bp proximal
Tssr62470	transcription start site region 62470	1013 bp upstream
Tssr62471	transcription start site region 62471	598 bp upstream