rs38357692 SNP Detail

Summary

• ID
  rs38357692
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152181466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGAGAT CCTCCTGCCC
  ATGCCTCCTG AGTGCTGGGA TTAGAGGTGT GGGCCACCAT ACCTGGACTC CCCTCCCCCC
  CTCCAGCCCG GTAATATTTG AGGAAATAGC TTTTTCATGG CACTTATGTC AAGAGTCTTC
  CTCTGTGGGC ACGGTCTTTG TTCAATTTAA ATTTGAGGCA AGCAACCACT TTGGAAGCTT
  S
  ATGTGTGGTT CCTGCTTGCC TGCTCAGTTG GCATTGGGAT CCCCTGAAGT TACACTGCTA
  GCAGTTTATA AAAGACTGAC TTTGCAAACA TACAGACATC TCACTTGAAG GCCACTGGGT
  CAGTAGTGAC ATGGGGAGCT GAAACTATCC AGCCACCAGT TAGACACTTC CAGCTAGTGA
  GGACCGATGG GGCCTCAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51675374	NES14642780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38357692					SNP	C	C	C	C	C	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51675374	NES14642780	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152181466 () rs orientation: forward

Symbol	Name	Function Class
Ak5	adenylate kinase 5	Intron
Rr587559	regulatory region 587559	617 bp distal
Rr587560	regulatory region 587560	1010 bp distal
Rr587561	regulatory region 587561	406 bp distal
Rr587562	regulatory region 587562	1727 bp proximal