rs38357367 SNP Detail

Summary

• ID
  rs38357367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127764849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTATG GGGTCTCCAT
  TACCTACCTG GCTGTTTTCT CTTCTCTGGT GTTCGCTGGG CTGTACAACC ATTATCGGCC
  ACTGGGTGGC GCTGAAGCGC CAGGCAAATT ATTTGCTGTG GTCAGGCCAT CATTTTGACT
  TTTAGCCAAC ACTAAATGTT ACAGGGAAAG GTTACTGACT TCTGCAGTCT TTGAGATACA
  R
  TATTTTATTA TCTGTCCATT TCCCTTGAGT TTTTACTTGA CAAAGTCTGA AGGCATTTTC
  TTTTTGGTTT TAGATTAGAG ATATTAATTT ATTTGTACAT TTTTGTGACA AGTGGAGTGT
  TGAAAAAAAA AAAAAACCAT ACTGTTAACT ACGTGGTGAG GTGCATTCTA TACAACCTTA
  ATAACTAGTG ACATGGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss51616694	NES14661297	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A		A	G
ss320958804	CHEV_3_127674118	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs38357367					SNP	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616694	NES14661297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127764849 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	within coordinates
Rr52	regulatory region 52	within coordinates
Rr584913	regulatory region 584913	within coordinates
Rr584914	regulatory region 584914	105 bp distal