rs38356220 SNP Detail

Summary

• ID
  rs38356220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113699861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCCTT TTAGATTTTT
  ATTATTTTTA ATTATGTAGG TGTGGGTGTG TGTACTTGTG GGTGCAGATG CCTGTGGAAG
  CTAGAGATGA TAGAACAAGA TTTACCTATG GGCTGTAGAG GTGTCAACAT TATTCAAGTT
  CTCCAAGACC TTGCACTGAA TCCTTGTAAT CGCCACAGGT GACTGCCTAG TCTGGAGTCA
  Y
  GAGTAGTTAC TGCCTTCTGA GTGCATTTGT AATTACTATC TGGGTATGCC ATTTGCCCAG
  GGAAGGCTTT CTTTACTAAT TTTCAAAGTT AGGATTGACT CAACATGAGC TCATAAATTA
  ATGTACATGG CAGCTTTTCA CCTTATCCAT TCTGTCCAGT GCTTTTTTAA TTGACTCTGG
  ATGCTTTTGA AATGATGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51839613	NES14764950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38356220					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839613	NES14764950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113699861 () rs orientation: forward

Symbol	Name	Function Class
Rr636588	regulatory region 636588	1455 bp distal