rs38355899 SNP Detail

Summary

• ID
  rs38355899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90450335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGATGCA GACTCCTGGG
  GAGGTGACAT TTGGGCTAAA CTCTGATGAG GAGGGCATAG GGGAGATGGA TAAAGTCCGA
  ATAGGTGAGG CATAGACGAA CCAAATATGT AGTGGTGGGG TAGTGAGGTC CTGGAGATCC
  TGTTGCAGAA CAGAAGCCAA ATAGAATCTT AGGTCCCGGA AGTTATTGAC AAGCGGCCTG
  R
  GCATCTTAGC CTGGCTCTGG TTCCTGCCTG TCCTGTGGAT GTCTGTTCCC AGGCCTGGAG
  TGATGTAGAG ACGGGTGTTC CAGGAAACCA TTTAAATGCT TAGGAATACC ATGCAAGTAT
  ATTTGGGGGC AACTCAGAAG GCCTCGTGTC CAGATCTGCA GGGTGCCAGA GCCTGGCAGG
  CACAAATCTA AGGTCCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51362831	NES13737461	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38355899					SNP	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362831	NES13737461	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90450335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klf15	Kruppel-like transcription factor 15			Intron
				Noncoding-Transcript-Variant
Rr634214	regulatory region 634214			1407 bp distal
Rr634215	regulatory region 634215			1912 bp proximal
Tssr57654	transcription start site region 57654			944 bp upstream