rs38354271 SNP Detail

Summary

• ID
  rs38354271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:100064577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCATGA GGGAAACACA
  CAGAGTGGGT AGGTCACTTC TGTACCATGT GTGACATCAT TAGTCAATCC AGTAACTAAC
  CAGTGTCAAC AAAGCCACGT AATCGGGTCT CGTTCCACTT CTCCAACTGT GGACTAGGTG
  GTGACAACCA CATGAGACAT TAAGTCTTCC CAGGCAGGGA TCCCTGTCTT CTGTGAACAG
  Y
  CATGAATCAA CTGAACAGGA TGTGCCAGGA TGTTTAAGAC AGTCATATAT TTAATTGTGA
  GTGAATGACC ACCGGTATTT CTGCCAGTTG CTGTATTGTT TTTATGGGTT TTGGATAAGG
  CTTATTCCCC ACACGGTTTC CCATTCACAG TGGAGCTTTG TTCAACATTA GCGACATCTC
  TAATATTTCT GTCGCCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51789574	NES14780290	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38354271					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51789574	NES14780290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100064577 () rs orientation: forward

Symbol	Name	Function Class
Rr635572	regulatory region 635572	1392 bp distal
Rr635573	regulatory region 635573	491 bp distal