rs38350122 SNP Detail

Summary

• ID
  rs38350122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75440914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAGTATT CAAAGCTTTA
  TATAATAGAC CAAAGCATAA GTAATATCTA AGTAATCTAA AACTAACAAC AATCACCTGG
  TATTTAGATT TACGTATAAC AGTTTAATAA GTGTAAGAAG TGAATGTACC TCACCTTAAT
  GAAAGCGGCT CTCAGAGTCT GAGCTGCAGA CAAATTTACT CGTTCTAGCT ACAATGAGAA
  R
  TTTAAAGTTA TGATTAGTAT AAGCGTTTTT TGGGGAAAAA CATTTCTGAT GTTTTGTTCT
  CTATTAATGA TAAATCCATC AAACAATAAG CAAAAATGTC AATAGTTATA AGTCAGAACT
  CTTCAAAAAA TTAAAATTCT TACTCAACCC TGTAAAAAAA ATTTTTTTTA AAATAAGATG
  TACTTTACCC GAAAGTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51558206	NES14679426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38350122					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51558206	NES14679426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75440914 () rs orientation: forward

Symbol	Name	Function Class
Pdcd10	programmed cell death 10	Intron
Rr578345	regulatory region 578345	517 bp proximal