rs38345944 SNP Detail

Summary

• ID
  rs38345944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49823504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACATGTCAC AGAAGACAAA TCAAAAGTGG TTGGTCAGAC
  ACTGAATAGG TGACCTATGC ATATTAGCTC ACAAAGATAA ATGAAAATCA ATGTCACATG
  W
  TTTTTTTTTT AGTAAGAATT AAATCAACTG TTCAAGTAAA TGGAAAACTG TACATTGCTA
  TTCAAATATT AGTGATTGTA ATTAGCTTTG TTTGCTTATT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ
ss51521173	NES14698755	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ
rs38345944					SNP	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51521173	NES14698755	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49823504 () rs orientation: forward

Symbol	Name	Function Class
Rr576117	regulatory region 576117	1990 bp distal
Rr576118	regulatory region 576118	636 bp distal
Rr576119	regulatory region 576119	1765 bp proximal