rs38334282 SNP Detail

Summary

• ID
  rs38334282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121890415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTGATCGA TCTCTGCTTT GTTGGCTGTC GGAGGGAGGG
  CGTTGTCCTG GTTCTCACTG AGATTCTGAG TTCCTGCTGT GACATTTGCT CAAACCTTAC
  Y
  TCTGAGGGCA GAGGGTACTG ATTTTATTCA CTTTTCCAAG TAGGTATGCT GGGTTTGTGC
  TGAGCACTTT ACTTTAGCCA ATCTTGCTGC CCATCACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51021996	NES13908008	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T		C	T	T		T
ss135734875	ENSMUSSNP7214802	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320908310	CHEV_3_121799684	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38334282					SNP	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021996	NES13908008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121890415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr584229	regulatory region 584229			1612 bp distal
Rr584230	regulatory region 584230			82 bp proximal