rs38330486 SNP Detail

Summary

• ID
  rs38330486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119687816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTTGCA ATTAGGAGGG
  GGTTGTATTG TTTTCCAGGA TAAAGGTGTT AGTCCAGACT CGTGTAATGT AATGTGCAAC
  ACTCTGGGGG TCTTTGGGGG GCGGGGGTTG GGGGGAAGCA AGTTTGTTTC TGGGTGAATT
  TGCCCGTAAC CAACCCCTGA AATGGATGCA AATTAAAATG AGAGATTTCT GTGATACAAG
  R
  TAGCACTCAG CGTAGCCTTC AGGCCCGCAT CCCTAAGAGG GGGCTGGCAG AGCCCCAGAA
  TTCATTTTGC CTGCACTCTT ATCCCAGAGC AGCGCAACCA GTCCATGTCG AAACATATCC
  CCGACTTTTA TTATTTTTGG AGCCTGTCCA GGCTCAACGC ACAATCTTTA TTTTGTACTT
  TACCTCTGCA GCTATTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51014972	NES13913085	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38330486					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014972	NES13913085	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119687816 () rs orientation: forward

Symbol	Name	Function Class
Gm66375	predicted gene, 66375	within coordinates
Gm66384	predicted gene, 66384	within coordinates
Rr583949	regulatory region 583949	225 bp distal
Rr583950	regulatory region 583950	within coordinates