rs38321551 SNP Detail

Summary

• ID
  rs38321551
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121933326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCCAG GATGCAGGTT
  GCCTCTCAGC TGTGTGAAAG TTAACATGGG TGGCTATGAA GTTCTTTTCT GTTGTCCTGA
  GCCCCACAGG TCTCCAACTC TCCAGGTAGA GTGTGGGAAA TGATCTTGTT AGGCAGTAGA
  GTAGATGGAA TGAAGAAAAA GACGCAGCAG ATGGTTCAGG TGTGTGCAGG GAAGACTTCC
  W
  GAGTGACTGC ATAACCCTTC CACTTAGCTG TCACAGACAG CACCCATCAT CAACAGAGAC
  TGGGGGCTGT CACCTGATTT CTGCATAGTC TGTGCCCGTG GGGAAAGCCA CAACAATAGC
  ATCAGGAAGA AGACATAATG AGACAACTAA ATTTACCATA GCATGTATCA CAGCTGCTGG
  CTCATAAGGA AGGGGTCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51021568	NES13907228	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38321551					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021568	NES13907228	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121933326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm43158	predicted gene 43158			within coordinates
Rr584243	regulatory region 584243			1084 bp proximal
Rr584244	regulatory region 584244			1342 bp proximal