rs38319829 SNP Detail

Summary

• ID
  rs38319829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85986415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCTCCA TAAAGCTCAC
  AGAAACTCAT GTTCTACTTA TCTAAGTGTA TTTTGAAACA GATTTGCAGT TTCTTAACAA
  TGCTATTTAA TTCTACAATA AAAGTTGACT GGTGTGTCCT GCTCCTGGGT CTGCTCTCTG
  ATCAGGCGTC ATAGACACGT TAACTGAGGT GTGATTGACA GTGAAGATTA GCGAGGTGCT
  R
  GAGGGCAGCC TTGTCCTAGC TGCTCACTTA TTTCTCCTCT ATCTCATTTC CCCCCTTTCT
  GTCTTTCTTG TTTTTGGTTG TGACTGGATC TCAGTGTGAA GCAGCTAGGT AGCACAGGCT
  AGCCTGGAAC TTACCAAGAT TCTCTTGCTC CTGCCTCCTA AGAGCTGGGA TTAAAGACTT
  TTAATTACTA CTGTTACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51757801	NES14802214	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38319829					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51757801	NES14802214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85986415 () rs orientation: forward

Symbol	Name	Function Class
4930553P18Rik	RIKEN cDNA 4930553P18 gene	80 bp downstream
Gm33319	predicted gene, 33319	1524 bp upstream
Gm66378	predicted gene, 66378	within coordinates
Rr633312	regulatory region 633312	611 bp proximal
Rr633313	regulatory region 633313	707 bp proximal