rs38311027 SNP Detail

Summary

• ID
  rs38311027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30778202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAGTCC AAAAAGAAAA
  ATGTTTTCTT TTAGGAATTT TTTTAATTAA ACATTTGTAT CCTACTGGTC TATGAGCTGA
  CCATCTAGTG TCCTTCTCCA CAAAAGAACT TTAAAGAGCT TCTTTGGGAA AAACCCAATT
  TGAAACAGCT TCAAATGGCC AAAGACTAAT TAAACGCTAT CAGATAAAAA TACATGAATG
  Y
  ATAATGAAAT TTTGACAATA AATCAATTTG TCATCAGTGA ACCAACTCTT TAATATGAAA
  ATGAGACTTT TCTGTGTGCT GTGCTGAGAT TGGCTGAGTA TCTGGTACTG GGAATACAAT
  CATCAAATAT ATGTGCTGAT GGTACTGGAA GACAGGGGTG GGGAAGGAGA GGGGGTGGTC
  TGAGAAGTAA CTGGGTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss51448614	NES14439941	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs38311027					SNP	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51448614	NES14439941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30778202 () rs orientation: forward

Symbol	Name	Function Class
Rr374761	regulatory region 374761	within coordinates
Rr574818	regulatory region 574818	1394 bp distal
Rr574819	regulatory region 574819	1660 bp proximal