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rs38311027 SNP Detail
Summary
  • ID
    rs38311027
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:30778202 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTCAGTCC AAAAAGAAAA
    ATGTTTTCTT TTAGGAATTT TTTTAATTAA ACATTTGTAT CCTACTGGTC TATGAGCTGA
    CCATCTAGTG TCCTTCTCCA CAAAAGAACT TTAAAGAGCT TCTTTGGGAA AAACCCAATT
    TGAAACAGCT TCAAATGGCC AAAGACTAAT TAAACGCTAT CAGATAAAAA TACATGAATG
    Y
    ATAATGAAAT TTTGACAATA AATCAATTTG TCATCAGTGA ACCAACTCTT TAATATGAAA
    ATGAGACTTT TCTGTGTGCT GTGCTGAGAT TGGCTGAGTA TCTGGTACTG GGAATACAAT
    CATCAAATAT ATGTGCTGAT GGTACTGGAA GACAGGGGTG GGGAAGGAGA GGGGGTGGTC
    TGAGAAGTAA CTGGGTCTGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
CAST/EiJ
FVB/NJ
NOD/ShiLtJ
PWD/PhJ
ss51448614 NES14439941 PERLEGEN MM_PANEL2 f SNP T C T T C
SNP Consensus Information
SNP Consensus Type
AKR/J
CAST/EiJ
FVB/NJ
NOD/ShiLtJ
PWD/PhJ
rs38311027 SNP T C T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51448614 NES14439941 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:30778202 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr374761 regulatory region 374761 within coordinates
Rr574818 regulatory region 574818 1394 bp distal
Rr574819 regulatory region 574819 1660 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory