rs38309509 SNP Detail

Summary

• ID
  rs38309509
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:98081550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGAAGG AATGGCCAAG
  GTGAGAGGTG GCCATTTCCA CCTCAGAAGA GTCAAATCAA ACGTGGGTCT TCCCATTTCA
  AATGCTTTTA TTAAGGAAAA AAAGTCCCTC ACAGGTGTTC CCAGCCATTT GGGTTTTAGT
  TAATTCCCAA TGTAGCCAAG TTGACAACCA AGACTAGCTG TCACAAGTTC CCATACCTTT
  M
  AGTGCCTCCA CATAAAAGAC CAAGTTTAGA GTACATGAAC ATTAGGGGGC ACACATGAGC
  CATATCCGAG TCCAATCAAT CACACTTCCC TCAGACAGAT TTTCCTTTAA AAATGCTTCT
  TACATGGAAA TTCTAGACAG CCAGGATACA TCCACCTCCA TCCTTTTGCA GACTCTACTT
  CTCATCTGTC TTCTTGTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51380885	NES13737571	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38309509					SNP	C	C	C	C	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380885	NES13737571	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98081550 () rs orientation: forward

Symbol	Name	Function Class
Rr379828	regulatory region 379828	1125 bp downstream
Rr635261	regulatory region 635261	35 bp proximal
Rr635262	regulatory region 635262	697 bp proximal
Rr635263	regulatory region 635263	823 bp proximal