rs38309023 SNP Detail

Summary

• ID
  rs38309023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:98081781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACATGAAC ATTAGGGGGC
  ACACATGAGC CATATCCGAG TCCAATCAAT CACACTTCCC TCAGACAGAT TTTCCTTTAA
  AAATGCTTCT TACATGGAAA TTCTAGACAG CCAGGATACA TCCACCTCCA TCCTTTTGCA
  GACTCTACTT CTCATCTGTC TTCTTGTCTG TGAATCTGAC TCCTGTCATG GGGGCACAGC
  R
  CACAATAGGT TCAGAGCACA GCCTGAGTGT TAGCCTTTTC ATCTCCCTTG CAGGACGTGT
  ATCAGCAAAC TGTGGTTGCT TCGAGGGACA GTTAAGGTGT TGTTTGTAAG GTTCTCAGCA
  CCCAGCACAC CTTGAGCGTG TTTCTGTTGT CATTCAAAGC TCCTTGCAAA AGATATCTTT
  CCTACAAGGT CCCTGTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51380881	NES13737573	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38309023					SNP	G	G	G	G	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380881	NES13737573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98081781 () rs orientation: forward

Symbol	Name	Function Class
Rr379828	regulatory region 379828	1356 bp downstream
Rr635261	regulatory region 635261	175 bp distal
Rr635262	regulatory region 635262	466 bp proximal
Rr635263	regulatory region 635263	592 bp proximal