rs38297108 SNP Detail

Summary

• ID
  rs38297108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90454615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTGGA GAGCCGAGGA
  GCTCTGAAGC CTCAAGAAGC CGGGCCCCAG CCTGAAAGCT CTTGACAGGA ACAGGATTAC
  CACGGCTTCC CATGGCAGGG CTGAGGCACA TTAAAGCCCA GGGCAACAGA GCCTTCAACT
  TGGGCACCTG GAGCCCCGAG TCTTTGGCTT CTATACCTCC CCAACTTGCT TTGTAACTCA
  R
  ACTGGCTTCA AACTTGCCAC CCCCACCTGC CTCCGTCTCC CAGGGAGCTC TCACCTTCCC
  AGGAATCTTA TCTGTGAGGC ACTGACTGAG TTTGGCTCCC ACTGCCTGGC ACACGCGATT
  TAGGGGCATC CCTGAAGAGT GTGGGGCTAA AGGTACAACT TCTATAGCAG TGGGTTGTGA
  GGAGGGACAA CTGGAACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51362813	NES13737470	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38297108					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362813	NES13737470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90454615 () rs orientation: forward

Symbol	Name	Function Class
Gm44421	predicted gene, 44421	833 bp upstream
Gm66826	predicted gene, 66826	28 bp downstream
Rr634216	regulatory region 634216	1417 bp distal
Rr634217	regulatory region 634217	106 bp distal