rs38296107 SNP Detail

Summary

• ID
  rs38296107
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:159223028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGTGAT TAGAATCTGT
  CATTTATGGT TCAACTTAAA TAAATCATAA ACTCATAGTC TCATAGGATT TGGAAGAGTC
  TTAGTTAAAA TCTAAACTGC AGCAATTGCC ACAGTGAGGC CCAAAGGTTT AAAGGTGGCA
  GTTTAGAAGT AAAATAGCAT ATGTGTAAAA GAAGTTGAAT CAGAAATAAA GTTGCATACA
  K
  CCCATGTTTG TCCTTTTCAT GATAGATTAC TTCACAGAAT ATATTAATAG AAAAAGCTAT
  GTTAGTAATA TATAAACCAG ATTTTAGCAT TTTATTGCTC AGCCTTTGTT GTAGTAAGTA
  TTTACTCTCA AATTGGGATT TCTACCCCAC CTTAAATCAT TCAGTTCCCA GATAAAAAGC
  ATACACTTGT TATATTTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51676403	NES14641262	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38296107					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676403	NES14641262	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:159223028 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Depdc1a	DEP domain containing 1a			Intron
				Noncoding-Transcript-Variant
Rr588123	regulatory region 588123			303 bp proximal
Rr588124	regulatory region 588124			501 bp proximal