rs38290057 SNP Detail

Summary

• ID
  rs38290057
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24607516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCAGTAT ATTGCAAAGT
  TCAGAATAAA GGCAAGTATG CTATAGTCAG GTATCCAGCG AGCACATTAA TTATTACAGA
  GAAACAGGTG GAGAACACAT CCTACCAGGG TCCATCCAGT ACTGCAAAAA GACAGGGCAC
  CCTGACAGTC ATCATTCAAC AGCCTGAAAT CTCGCAGAGC CAGTGTGAAA ACTAATTAGT
  K
  CATCGTCTAT AAAAAGCATT CAGCTCACCG AAAGACTGCC CACGATCAGA TGAAGCATTT
  AGATGGTGAT TTATATGTGC ACCTTGGTCT CTGAAAAAAA AAAAAAACAA ACCTCATCCT
  GATTTGAAAC GGGGCCAAAA CACCAAGTCT CACGCTGCTC CCAGGCAGTG CTCCATGGCT
  GAAGGTGTTT AATAACTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51253627	NES13798873	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38290057					SNP	T	T	T	G	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51253627	NES13798873	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24607516 () rs orientation: forward

Symbol	Name	Function Class
Rr627250	regulatory region 627250	880 bp distal
Rr627251	regulatory region 627251	within coordinates
Rr627252	regulatory region 627252	627 bp proximal