rs38288574 SNP Detail

Summary

• ID
  rs38288574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108448287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGAGCTC ACAGAGGAGC CCTGTGCTAT ATTGCATGCT
  TTTCATGGCT TCCAGGTTCC AACAGGCCTT CTGAGCAGGG CCTTTAGAAG AAAGCTACCA
  Y
  TGTGGTTATG CCATCCTCTC AAGTGGCCAG GACAAAGCCC TGCCACCTAG GAAGGTCTTC
  CTGCTTTAAT AAATTCATAA ATATTCTTAT GCATGCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51813767	NES14768651	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	T	T	T	T	T	C	T
ss133503023	ENSMUSSNP2311700	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38288574					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813767	NES14768651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108448287 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	784 bp proximal
Rr636116	regulatory region 636116	1206 bp proximal
Rr636117	regulatory region 636117	1489 bp proximal
Tssr58061	transcription start site region 58061	1707 bp upstream
Tssr58062	transcription start site region 58062	1741 bp upstream
Tssr58063	transcription start site region 58063	1758 bp upstream
Tssr58064	transcription start site region 58064	1789 bp upstream
Tssr62385	transcription start site region 62385	323 bp downstream
Tssr62386	transcription start site region 62386	1210 bp downstream