rs38282761 SNP Detail

Summary

• ID
  rs38282761
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113699205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAGATT ATTTACATAA
  CACATATATG ACCATATTTA ACTGTTAGGT CCAAAGTATT TTGTTTTAAT GTGTGGTTAA
  CAACAAGTCG ATACTGAACT CTTACAGTGT TTAAGTCCAG TGGGCAGGCT CTAAGTCGTG
  TCCAGGCTTC TAGGCTTCTG TGCCTGCAGT GCTGTCGAAG GATCCTGCTG GCATTCTGCC
  S
  TCTCCTTTCA AAGCCTAGCA TATCCCACTG GCTTTCCTGC CCTTCTCCCA TCTTAGAACT
  GTAGCCCCAG CCCTTGTCTT TATTGTCTAT TCATCAGTGT TTGCCCTCAG CCTAACGGTG
  ACCCAGAGCC TGACACATTG TGCTCAGATC CCACCTTGCC GTCCTCACAA ATCTGGTCCT
  TTCCCTTTCC AGGTCTCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51839615	NES14764949	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C		G
ss321911665	CHEV_6_113672238	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38282761					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839615	NES14764949	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113699205 () rs orientation: forward

Symbol	Name	Function Class
Rr636588	regulatory region 636588	799 bp distal