rs38281147 SNP Detail

Summary

• ID
  rs38281147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108424308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTTGGA TGGAGTGTGA
  AAACTCAGTC TTGTCTTGAG GATCAGGCCA CTGGGGACCT CAGCTCTCCA GAAATCCTGG
  ATTTAATTGG CCATACTGTC AAAAGATTTT GTCAGAAGGA AACCAGAACC AATGCCACAG
  GAACACTTGC TCGGCCCTCT TGTCCTGAAA CCCCCATCAC TGACCTCTCA GCACCTGGAT
  Y
  CCTGAAAACT GCCAGAAGTC AAGGTTCAAC TGTCCTAGTG TAGTGTAATA GACTTGGAGG
  AACCCTGTCC CTAAGGCTTT CAGAACTTTC TTTCTCTTCC AAGGCTTCTC TCATGGTGGT
  AACTCTCCTG CCTGGGGCCT TCAAAGCAGC TCTGTTTACA GGAGCGTGAA GATGGTTGCA
  CAGCCCTTGA GCTTTCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51814106	NES14768925	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	C	C	C		C	C	T	C		T
ss133502595	ENSMUSSNP6205192	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss321892716	CHEV_6_108397341	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38281147					SNP	C	T	T	T	C	T	T	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814106	NES14768925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108424308 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636107	regulatory region 636107	1957 bp distal
Rr636108	regulatory region 636108	275 bp distal
Rr636109	regulatory region 636109	within coordinates