rs38281083 SNP Detail

Summary

• ID
  rs38281083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151952646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAATCCT TGGGCTAGAC
  TTGAGAGCTT ATTAAGTAAA GTCCTTGTCT TGGAAACATG AGGATCTGAG TTGAGTCCCC
  AGAGCCCAAG TAAAACCAGG TGCACACCTG TAATCTCAGC ACAGGGGAGG CAGAGACAAG
  CGGATTCCTC AGACTGCTAG CCAGTCCTGT CAGAGAATGG CATCCAAGGT TGTCTGGCTT
  Y
  TCCTAGCTTG GGCAAGTACA CATACCATAC ACACATGCTG AATTCCAAAC CACTGTTGAG
  TTAGCTTTTG TCTTACCATG CTTCTCCTTG CTTCAGCAAA TGCCGCCTTC TCTTCCTCTA
  TTCTCCTTCG GGCCTCCTCC TCTGCTTTTC GTTTTTCGTC TTCTCTCCTT TGCCTTTCTA
  TTTCCTCAAA ACTGAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060310	NES13426185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38281083					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060310	NES13426185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151952646 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	1360 bp distal
Rr587499	regulatory region 587499	1304 bp distal
Rr587500	regulatory region 587500	1138 bp distal
Rr587501	regulatory region 587501	846 bp distal
Rr587502	regulatory region 587502	547 bp distal
Tssr36179	transcription start site region 36179	99 bp downstream
Tssr36180	transcription start site region 36180	177 bp downstream
Tssr36181	transcription start site region 36181	201 bp downstream
Tssr36182	transcription start site region 36182	216 bp downstream
Tssr36183	transcription start site region 36183	244 bp downstream
Tssr36184	transcription start site region 36184	947 bp downstream
Tssr36185	transcription start site region 36185	963 bp downstream
Tssr36186	transcription start site region 36186	1071 bp downstream
Tssr36187	transcription start site region 36187	1248 bp downstream
Tssr36188	transcription start site region 36188	1316 bp downstream
Tssr36189	transcription start site region 36189	1342 bp downstream
Tssr36190	transcription start site region 36190	1420 bp downstream