rs38279358 SNP Detail

Summary

• ID
  rs38279358
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31091318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTTGTCT AAGTGCTATC
  TTAAAAAGGA GGAATTTTCT CTTTTAAGTC TCAGACATTT TTCTTTTGCC TCCCTCCGTT
  CTTACTATGA GTATGTTAAA GCAAAGAATT GTAGCTGGAA TCATATCATA ACGTCATCTG
  TGAGGAGAAC ATCTCCGTAT CTCACTCTCT TGAAATAAAA TCAAACCCTG AAGCCATAAC
  W
  CTCGTGCCGT TCTACAGAAT AGCCACAAGC CCACAATCAC CTTATGTGAG AATGCTGAGA
  ACTATCTTGG CTCCTTTGCT AGAAGCATTC GTAAGCATCA AGTCCTTAAA CAACAACCAT
  AGAGGCCGAG ATACCTATCA GAGCAGCCCG GGCACTTTGT CAGAGTCGGG TAAACACAGA
  AACACCAGTT CACAACGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260149	NES13793988	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38279358					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260149	NES13793988	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31091318 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	1344 bp distal
Rr627886	regulatory region 627886	1211 bp distal
Rr627887	regulatory region 627887	638 bp distal
Rr627888	regulatory region 627888	241 bp distal
Rr627889	regulatory region 627889	5 bp proximal
Tssr55448	transcription start site region 55448	603 bp downstream
Tssr60154	transcription start site region 60154	901 bp upstream
Tssr60155	transcription start site region 60155	419 bp downstream
Tssr60156	transcription start site region 60156	633 bp downstream
Tssr60157	transcription start site region 60157	704 bp downstream