rs38278005 SNP Detail

Summary

• ID
  rs38278005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101469464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGTAC CCCTATCCCA
  CTGTAAAGCT GCTAGGACTA CAGGTGTGCA CCACCTTATC TGGCTTTGTC CCAGATTATC
  AAGCTTATCC AGCAAGTGCC TTTACCTACT GAGTCATCTC TAGCCCTCCC CAACCCTTCA
  TTCATTATAT GTATGAAACA GATGCCGTTG TGTGCACAGA ACTATGTTTG AGTTGTGTGC
  R
  CAGAACTATG TTTGACTGGC TTTGGTAAGC GAATTCAAGG ACAAGTCGCA CACTACCCAA
  ACCCTCCAAG CCAAAGCTGG GAGCACAAGA AGGCCTGGCC CTGCAGAGAT ATAGTACCCA
  CGCCTGTGTC CTGCCCCACA AGCGGCCCAG CCTAAAGAAC ACACTGATTC TTGTCTATGT
  TTTCCCCTTT CTGTGGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51583976	NES14669491	PERLEGEN	MM_PANEL2	f	SNP	A	G		A	A		G	A
ss135548591	ENSMUSSNP691768	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320852564	CHEV_3_101366071	CHEVERUD	SCREENING_POP	f	SNP						G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs38278005					SNP	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51583976	NES14669491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101469464 () rs orientation: forward

Symbol	Name	Function Class
Rr582081	regulatory region 582081	531 bp distal
Rr582082	regulatory region 582082	435 bp proximal