rs38275719 SNP Detail

Summary

• ID
  rs38275719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68492534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAATCA AGCTACAAGT
  ATATGCTTGT CTGCCCACAG AGGCCTAAAC ACACACAGCC CTCCGTCCTT TATGATGTGA
  CAGAAGTCAA CTGTAGGTCT CCATTCAGTC AAAGGTGCCA TTAGTGCCTT TGACCAGAGT
  GAGACAGAGG AAGACGTTTC TAGCATGTTC ATTCCTCAGA TTTGGTCAGC GTTGACGTCT
  R
  CATCTTAAAC TCTGCACGGG AATACGGAGG CTCCTTAAGG TGCTTACTGT AGATCTTATT
  ATCTCATAAT GATTTGTATT CTTCCAGGGG GGTAAAACTT AAATGTGCTG GGCCGTGTTG
  CCCTGTGTAT TTTTCATCCC CGGTGTTCTC CAACCAGGGA CTAAGAGCTC AGGGTGGTGA
  CTTTGTGTCC TGAAACCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51542846	NES14685746	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38275719					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542846	NES14685746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68492534 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578033	regulatory region 578033	1012 bp distal
Rr578034	regulatory region 578034	within coordinates
Rr578035	regulatory region 578035	142 bp proximal
Rr578036	regulatory region 578036	1318 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr899	transcription start site region 899	1060 bp downstream
Tssr29468	transcription start site region 29468	1076 bp downstream
Tssr29469	transcription start site region 29469	1020 bp downstream
Tssr29470	transcription start site region 29470	994 bp downstream
Tssr29471	transcription start site region 29471	909 bp downstream
Tssr29472	transcription start site region 29472	888 bp downstream
Tssr29473	transcription start site region 29473	858 bp downstream