rs38265554 SNP Detail

Summary

• ID
  rs38265554
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135504446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCATTCTG TGTGCCCTAC TTCCAAGTTA GACATAAGTG
  AACTTTTCCA TGGATGTAGT GGGTGCGTGC TTATAAACCC AGGCGGAGCA AGTTATTGAA
  S
  TTGCTCAGCT ACATGAGACC CAGGTCTTGA AAAACGAGGG CAGGAGGTGA GGGAGACGAG
  AGGGGAAGAA GGGAGGGGAA GGGGAAGGAG AGGGGAAGAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51377770	NES14476839	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38265554					SNP	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51377770	NES14476839	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135504446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419193	regulatory region 419193			1838 bp distal
Rr419194	regulatory region 419194			1052 bp distal
Rr419195	regulatory region 419195			1137 bp proximal