rs38261777 SNP Detail

Summary

• ID
  rs38261777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18434972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGAAG ACTGCCTATC
  AATACCTGGT CTAATCAGCA GGGCACTGGG GCCCACATTC CCTTTTGTGT TTGTGGGAAC
  TAGGGGGCTC CCTGTGGAAG GCTTTATGGG TACAGTCAAA GGCAACTTCT TCACAGGGTC
  AGTGCTTTCT GTCACTACAT CTGTCTGGCA AGCAACGGAC CTTGTCACAG GCCCTTCTGT
  Y
  GCCACAGATA TGGAAGCCAG GCGCTTATCT TTTGTCTTCC GTGGGAGGGA GAGGCCGGGC
  TTGCCATCAC TTCCCTTCTT CATTTGCTCC ATCATTTTCT TCATCTTGTC TATCTCCTCT
  TTGAGGTCGG TGGTGTGTGC TTCCTCTCGG CTCAGCTTGG CGCGCAGCTG CTCCCGTTCC
  GTGTCAAACT CGGAGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss51250481	NES13802225	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs38261777					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250481	NES13802225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18434972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			469 bp upstream
Gm67618	predicted gene, 67618			64 bp upstream
Rr626922	regulatory region 626922			within coordinates
Rr626923	regulatory region 626923			210 bp distal
Rr626924	regulatory region 626924			1536 bp proximal