rs38257301 SNP Detail

Summary

• ID
  rs38257301
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83575294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTATTGG CTGCCATAAT
  GACTCACAGT CTATTCTGGG ACTTGTCTGC TACTCTGACC TCAAATGTCC TGTCCTTTGG
  TTCCACTTGT AGAGGAATCA GAGATTTGCT AGCAGGCACA GGAGCCTCTA CCAGAGTGCT
  GGGGAAATCC TGGACTTGAG CTTTCCCCTC TCTCTGTTTT TGATGTTTAC GTAAAGCCCT
  K
  CTGTGCACAG TTGTCATGAC GCCTAATGTG TGATACCAGT AAAAGCAGCT GTCAGTGGAT
  GGGTGGCTGA CATAGTTTTT GGCAATTGAC AGCATTGAAA AAACCTAAAA TGGGATGATG
  GCTGTCAATA TCAGACAGGT TAAGTGAACT TAATGTACAT TAACTTATAT TTAGTATAAT
  CAGTGAAATG CTCTGGTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51353413	NES13744287	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	T	G	T	G		G	T	T	G		T
ss321844682	CHEV_6_83548306	CHEVERUD	SCREENING_POP	f	SNP									G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38257301					SNP	G	T	G	T	T	G	T	G	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353413	NES13744287	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83575294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	717 bp proximal
Rr632898	regulatory region 632898	within coordinates
Rr632899	regulatory region 632899	375 bp proximal
Rr632900	regulatory region 632900	529 bp proximal
Rr632901	regulatory region 632901	1428 bp proximal