rs38249650 SNP Detail

Summary

• ID
  rs38249650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86993494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCACT TCCTAGGAGT
  TGGGATTACA GATGTGTCCC ACTTCACCCA GCTTGAACTC CGATTTTCAA GAACCACGGA
  AAGGTGCTCC TTAAATTTCA AAAGAAAGCA TAGCCAAGGT TCTAGATTTC CATTCAGAAC
  TATAAATTAT TGCAGTTGTC AGATATGAGG TGACATTTAA AGTCAATGAA GACAGTTTCT
  R
  AGTTCCTGAG AGCTGGGTAA TGTGCCAGGC CTCTTCTGAA TGCACTGCAG GGCTGTCATT
  CACGCCGAAG CACTGGAGTC AGGGTCTGCA GGGAACTGCT GCTCTCCTCC TGCTCCCCGC
  CTTCCCTCTC TGCCTCACTT CTTCCTTATC TCTCTGTTGT GTGCAGAAAG TGATTGACTG
  CAGGCCTTGT GCATGCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51746407	NES14795489	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38249650					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746407	NES14795489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86993494 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfu1	NFU1 iron-sulfur cluster scaffold			Intron
				Noncoding-Transcript-Variant
Rr633575	regulatory region 633575			266 bp proximal
Rr633576	regulatory region 633576			300 bp proximal
Rr633577	regulatory region 633577			614 bp proximal