rs38239443 SNP Detail

Summary

• ID
  rs38239443
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108584600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGTGT GTGTGGTCTG
  TGTGTTTGGG TTTATGCGAA CAAGTACAGG TTTCCCAAGA GGCTAGAGGC GAGGGATCCC
  CCTGGAGCTG GGGTTCCAGA CGATTGTTAG CTACCATACA CATGTGTTGG CAATTGAACT
  TGCTCTATCC TCATTGAGAG CAGTCTGTAC TCTTAACCAC TGGACCATCT CTCTAGCTCC
  W
  ACCTGAATAG ATTTTATCCT CTTTAAGTTT CTGGCTTCTA AGAAAATTTT TCTCTAAAAT
  TACACAAAGT ACTATCAGGA TTAATTTTTT TTTAATGTAA AAATGGGGCT GGAGAGATTG
  GCTCAGAGGT TTAAGAGAGC ATACTGTTCT TACAGAAGAA TTATTTGATC CTTAGTTACA
  ACCTGTAATT CTAGCTTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51811450	NES14765824	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38239443					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51811450	NES14765824	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108584600 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
Gm67596	predicted gene, 67596	within coordinates
Rr636144	regulatory region 636144	1088 bp distal
Rr636145	regulatory region 636145	303 bp proximal