rs38238646 SNP Detail

Summary

• ID
  rs38238646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:71344741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAGTA TTTACTTTTC
  CAAAGCCAGA ATTTAACTAG GGAGAAAGGC AAAAAGTTTC AATGGCAAAT ACGAAGCTTT
  AAATGATTTA TGAAGAGAGA TGTTCAGGTA AGAAAACAGT TTAACATGGA GTGATCTTTT
  CCTTGGATTT TACATAATGC CAACCAAGAG GCTATCAGTA TCGGGATGAT GCTTCTCATA
  Y
  CGATCAGCTC TGGGATATTT TATCTGTTGG CTCAGCTCTA TTGCCAGTGT TTGGTCTGTT
  ACTACAACCA CTTTCTGATC ATGTCTAATT GAGGAATGCC TCACCAATCT GGTATTATCT
  GCAGGGAGAG GGCTTTCTCA AGAGCAATGA GAACAAATTC CTGCAATAGC TTCATGCCAA
  AGTAATACAA CTACACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50469314	NES13701949	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38238646					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50469314	NES13701949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:71344741 () rs orientation: forward

Symbol	Name	Function Class
Rr540369	regulatory region 540369	97 bp proximal
Rr540370	regulatory region 540370	292 bp proximal