rs38237230 SNP Detail

Summary

• ID
  rs38237230
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108307957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGAATG AACAACTCAG
  TACCTCTCCT GATCTCTGCG GGTACCTGTA CTCTCATGCT TGTACCTCCA CACAGATAGA
  TATATTCAGA AAATGTCTTC TCCTCCTTCG GGTAGAGCTT ATCCGGTAAC GTCCTAACTA
  GTGGGAGACT TGGCTCTCAA GCCTTCTTGG TTATTTAGTA CAGTCAGAAT CCTCGGTTGA
  S
  AATCATTATA AGTCAGTAGT CTGATGCCAG TGTTTTGTCG GAATGGAATC CCAGGATAGT
  TCATATAAAA TGTTTGATGG TATTGTTGTT GTTGTTAATG TTATTGTTTG AGAGTTGATG
  GCTTTCCCAC TTCTACTAAA AGACTCAACT ATCTTCTCCT TTTCCCCATT AATCTAAAAA
  TTCTAGATAC TAACCATATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51817477	NES14771436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38237230					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51817477	NES14771436	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108307957 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636077	regulatory region 636077	190 bp distal