rs38233836 SNP Detail

Summary

• ID
  rs38233836
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:105348505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAAAC CAAAACAGCA
  GGGGGCCAGG GGTGATATTC CATCAGCATG ATCATGTTTC TGGAGCAGAA AGCATATGTA
  CTTCCTAGTG TCAGTTATTA GAAAGGCATT ACTGAGTCTT TCTATGGTGC AAAGTAAACA
  GTAGTGATAT GTCACATTTC TAATAAAGAA TGTTAGTGAC ACACTTCTGA GGAAATCTTA
  K
  ATCACTATTG TGCAAAGCCT TGACATTATT TTGTAGCATA ATATTTTCAT ATAACTTAGA
  AATTTAAAGA GACAAATTTG AGAATTTCCT AGAACCACTG AAACATCCTG CTTTCAAATT
  CATAAAACAA ACAGCACGGA AGCCTTTCCT GAACCATCTC AAGCATGCCA ACACACAATT
  TACTTATCAA AACGGGTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50792611	NES14216534	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38233836					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50792611	NES14216534	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105348505 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2c1	ATPase, Ca++-sequestering			Intron
				Noncoding-Transcript-Variant
Gm19667	predicted gene, 19667			within coordinates
Tssr86838	transcription start site region 86838			807 bp downstream
Tssr86839	transcription start site region 86839			781 bp downstream
Tssr86840	transcription start site region 86840			766 bp downstream