rs38232016 SNP Detail

Summary

• ID
  rs38232016
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:159221845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGCCTG CAAACCATTT
  TAAGTTTGCC ATCCATAGAA GAACTCTTAA ACCCAAACCA AGTAATTCCT CAATATATAA
  TGTACAACAT GGCCAACACA AGTAAGCATG GAGTGGTCAT ACTACAAGAC AAATCAGGTA
  GGTATTTAGA AAAGAATCTG GAATCTTTTC AAACCTAGTA ACCAAAGGTG CATTTATAGG
  K
  TAGTATAGAA AGTAGAACAT TTTCCTAGGA CACATTCATT TAGCAATAAT GATGGAATTT
  TTGGAAGTAA ATATTATTTA TGCTATCACA AAAAAGTATT TAATTGCTTA AATGAATTAA
  TATGACTTTA AAAATATGGC AGTGATAAAC ATCCAAAATG TAGACAATAA AAACTATATT
  AACAACACGT GCGTTAAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676415	NES14641270	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38232016					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676415	NES14641270	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:159221845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Depdc1a	DEP domain containing 1a			Intron
				Noncoding-Transcript-Variant
Rr588123	regulatory region 588123			1486 bp proximal
Rr588124	regulatory region 588124			1684 bp proximal