rs38228399 SNP Detail

Summary

• ID
  rs38228399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152723594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGAAAT GTTTCCAACT
  CTAAGCTGTG AGCATGCTCT CATTGTACCC CAACTCACTG GAGAGGCCAC CCACAATCTA
  GCTTGTGTGC TTGTGCTACA AAGTAAAAAC AAACAGACAA ATAAAACAAT AAAAACCATG
  GCGTTGGCAT CATAAATATC CTGAGAGTCT CATCCATTAC AAAAATAAAA GGGGAAGAAA
  R
  GCAGTTTATG GGAACAGTAA CCATCATAGA GTAAGCAAGA AAGGAACAAA ATGATTTGTA
  CGTCTGTCTT TCGCTAATTG CAGAAAGACG ATGTAAATCG GCCACTAGTG TGTGTGGCTG
  TCCCGCAGTA TGCAGTGGCT CCTCACTTCT GGCTCCCGCC TCCTTCCAAC CGCAGGAGGT
  ATCTACAGTG GCCATAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51062482	NES13894514	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	G		G	A	A	G
ss321029591	CHEV_3_152680921	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs38228399					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51062482	NES13894514	PERLEGEN	MM_PANEL	f	SNP	A/G
ss136105659	ENSMUSSNP3164774	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152723594 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	102 bp proximal