rs38220247 SNP Detail

Summary

• ID
  rs38220247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97317922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCAGTGC CTTAGCATTT
  ACGGCCCAGA ACCAAGGTGC ATAAAAAGGT ACAAGTTTAA ATTCAAGGAC CAAGGAGAAA
  TGTTGGCAGA AGCTTCGTGT TCCTTACAAA ATTAACCTGA GGGGCTGGCG AGACGGCTCA
  GTGGTTTAGA AGGATTTCTG CTCTTCTAGA GGACCAGAGG TGAGTTCCCA GCACCTGTGT
  Y
  GGGCGGCTTA CAACCACCTG TAATCCCACC TCTAGGGGAA TCTGGTGCCC ACTCCTGGAT
  CCTGAGGACA CACACCTGCG CTCATATATG AACATACAGA AGGGCAAATA CACATAACAC
  ACAAATACAA ACAAATCCTT TTAAAAAGCT AACTTGGAAA TGGATCTCTT TTAACATTAG
  CATCTAAGCA TGTATATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51772243	NES14791823	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38220247					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51772243	NES14791823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97317922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd4b	FERM domain containing 4B			Intron
				Noncoding-Transcript-Variant
Rr635138	regulatory region 635138			1171 bp distal
Rr635139	regulatory region 635139			234 bp distal
Rr635140	regulatory region 635140			249 bp proximal