rs38219677 SNP Detail

Summary

• ID
  rs38219677
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21862609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACGGGGTC ACATATCAGA
  TGTCCTGCAT GTCAGATATT TATAGTACAA TTCGTAACAG TAGGAAAATT ACAGTTATGA
  AAAAGCAACA AAAATAATTT ATGGTTGGAA TCACTATAGT ATGAGGAACT GTATTTAAGT
  GTAGCAGCAT TTCCTGTTAC CCAATCTGCT TCTAGATTGT GTTGGAAATA AGAGCACAAG
  K
  GAGCTCCAAC AGTATTGTGG GAAAATGACC AAATTCTGGA AGAGAGGAAC ACAGATCTAG
  ATCCTGTCTC CAACACCTGT TGTTTTGTTG TAGGAACATT TTGCTAACCT CATTTTCTTA
  ATCATCTGTA ATGGGGGCAA TGGAATGCTT CTAGAACTGG TACAAAAAAA AAGGGCATGT
  TAATATAAAT AAGAGAAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51435228	NES14440311	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38219677					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51435228	NES14440311	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21862609 () rs orientation: forward

Symbol	Name	Function Class
Gm65770	predicted gene, 65770	within coordinates
Rr574150	regulatory region 574150	1377 bp distal
Rr574151	regulatory region 574151	1276 bp proximal