rs38218537 SNP Detail

Summary

• ID
  rs38218537
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101618839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGCCGTGT TTTTCAGGTC TAGCTTCTGT TTCAGACTCA
  CAAATTCTAC AGCACCTTGG TACTGGAAAG AATTAATGGG CCAGTTGACC CAGACACACC
  W
  TTTCCAGCTC AGTGAAGGTA AATCTCTTGC CTAGTGTCTC AGAATCAGCT AGTCACAGCC
  CAGATCCAAA CCTTGATTTC CTCCCTCCGT GGAGCTGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51582620	NES14672104	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A	A	T	A	A	A	A	A	A	A
ss135549449	ENSMUSSNP1641393	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38218537					SNP	A	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582620	NES14672104	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101618839 () rs orientation: forward

Symbol	Name	Function Class
Gm65392	predicted gene, 65392	489 bp upstream
Rr1547	regulatory region 1547	224 bp proximal
Rr375471	regulatory region 375471	159 bp upstream
Rr582111	regulatory region 582111	1483 bp distal
Rr582112	regulatory region 582112	within coordinates
Rr582113	regulatory region 582113	500 bp proximal
Rr582114	regulatory region 582114	1245 bp proximal