rs38217960 SNP Detail

Summary

• ID
  rs38217960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113697480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCTGGG GTGTTCTCGA
  AAAAGGGCTG CACTGCCATC CCCAGGAGCA AGTGTCGGGA AAGGTGCACC TGGTGGTTAC
  ACCTTACTGC TTGTCTGTGT CTTGCTTGCG TTTGCTGGTT GATTTTGTCT TATACTGTTG
  GGCATAGTCC CCAGGGCCTT GTTTTTGGTA GGCAGTTCTC ACTGAGCCAT TCTCCAAGCC
  Y
  GTTCTGGTGT TTGTTAACCT GGCAGCTTTG CCTCTCTGTT CTCTGGCAGG TATCAAGGCT
  CTATCTAGCA CAAGGAATGC CCATTGTGGA GATGCAGATG AGATAGACCT GGTATAGGAG
  TCCTGCAGTA TAGCTTTGAC AGGAGACAGC CCTTTGGATA CCTTCATGTC TTAAGAAAAA
  TAGGGCAGGG CAGTGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51839631	NES14764970	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38217960					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839631	NES14764970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113697480 () rs orientation: forward

Symbol	Name	Function Class
Ghrl	ghrelin	639 bp upstream
Gm44033	predicted gene, 44033	1241 bp downstream
Rr636588	regulatory region 636588	589 bp proximal
Tssr62470	transcription start site region 62470	1051 bp upstream
Tssr62471	transcription start site region 62471	636 bp upstream