rs38216842 SNP Detail

Summary

• ID
  rs38216842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26694295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT CCAGTTTACA TAGAATTCAA
  Y
  GATAGACCGG TATTTCTTTT CTTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442514	NES14434353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	T	C	T	T	C	C
ss134696982	ENSMUSSNP2251264	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38216842					SNP	T	T	T	T	T	T	T	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442514	NES14434353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26694295 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	700 bp distal
Rr574325	regulatory region 574325	593 bp distal
Rr574326	regulatory region 574326	10 bp proximal
Spata16	spermatogenesis associated 16	Intron