rs38216547 SNP Detail

Summary

• ID
  rs38216547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83448467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTTCAA TAGTTCCTCA
  AAAAAGGAAG AAGCAAATTC TTATTTGCCT AACAGAGTGA CTGAGTATTC ATACATGGAA
  CTCAGGAGAA CCTCAGTGTA CAGTCCCCGC CCCCAGATTC TAGTCAAAAG GACAGAATGC
  TCCAACCCAT GGTGTCCTTG GTCACATCCA GCCATATTCT GAGCTTAGGG GACAGTCTCT
  Y
  ATGTCAGCCA GGCTAGAAAC CAGGAGCAGC TGCCAGTTGG AGTGGGCATG TAGGCCCCTT
  CTTTGGTCTG CTGTTTTCCA GCTCAACCAG ACATGGTTGT CTCTGGCTCC TTTAAAATGA
  GCTGCCTAAC TGAGCCTTCA TCCGTGTGTC TACACAATGG GAGGGTCTAA TGACTGCTAT
  GAGAGCTGTG ATTCAAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354939	NES13746934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38216547					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354939	NES13746934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83448467 () rs orientation: forward

Symbol	Name	Function Class
D6Mit128	DNA segment, Chr 6, Massachusetts Institute of Technology 128	163 bp distal
D6Mit1006	DNA segment, Chr 6, Massachusetts Institute of Technology 1006	125 bp distal
Rr632872	regulatory region 632872	407 bp proximal
Rr632873	regulatory region 632873	1691 bp proximal