rs38214282 SNP Detail

Summary

• ID
  rs38214282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83976686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGC ATCTTGCCTC AAAAACAGAG
  Y
  GACTGTTCAA ACTGGACGTT TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51568952	NES14673830	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	C		T	C		C
ss135420277	ENSMUSSNP5383511	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320822198	CHEV_3_83873301	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38214282					SNP	C	T	T	T	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51568952	NES14673830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83976686 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Rr397735	regulatory region 397735	within coordinates
Rr578974	regulatory region 578974	within coordinates
Rr578975	regulatory region 578975	62 bp proximal