rs38213462 SNP Detail

Summary

• ID
  rs38213462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101955012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCACATG AGGTCTTTCC
  CAGTCCGCCT AAAAGACGGA AGGAGACCTT CTGTGTAGGC ATGGGTGATT CCTTCTGCTC
  TGAAAATGGC ACTTCAGCTT TCTCTTGGCT AACAACCATA GGAAACATTG TTGTTTAGAA
  TGTCTCCTTG CAGGTGGTCC AGAACCTCAC AGAGTTGCTG TCTCATAATG CCATGTAACT
  Y
  GCTGAGTCAA AGATTCTGAG TAGGCCTACA ATGGCAGTCC ACAGTGCTTA TCAATTCCAG
  CCAGGGCTAA AATATCTTCT CTTTGATGCC TATATGAAGA CGAATAGGGG CATATTTCCT
  AGAAGGATTT TGGTGTTAAT TTCCTTCTCA TAGCTAGATA AGAGTGTAAA GATACAGGCA
  AGCAATGGTC TCAGAAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51588953	NES14670382	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38213462					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51588953	NES14670382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101955012 () rs orientation: forward

Symbol	Name	Function Class
Rr375477	regulatory region 375477	1357 bp upstream
Rr407227	regulatory region 407227	1141 bp proximal
Rr582166	regulatory region 582166	1496 bp proximal