rs38213450 SNP Detail

Summary

• ID
  rs38213450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34685677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATTTACC CAAGGAGTAC
  CTGGACCCTA TGGGGCAGGG ACCAGAGTTG TTCTGATTTG ATAGAAAGTT GGACCCTCCA
  ACACCAGGGC CTCTATTGCT ATCAGAGATG AGGAAATGTA TGCATAACAC AAGCCAAGAT
  GGGGTGTCAT CTCCAGATAT AGTCAACACC GCTCCTTTCC TCAGGGGCTG GAATTTGGCG
  R
  TGTTCCAAGC TGTTGGTGAC CAGCGCTTGG CGATGAGATC ACCATCATAG TGCCACCGAT
  GCAGAAGGGC CTGCTGCTCT GGCAAGCGCC CAGGCAGACG ACTGCCCTCC TCTCTCAGGG
  GAGTGCAAAC ACTAGACACG CTGTAAGGTC CAGCCCATCA CGGAGCAAGA CCCTGAACTC
  TTCCGCCTTT GTGTGTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51270973	NES13789524	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38213450					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51270973	NES13789524	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34685677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr628363	regulatory region 628363			210 bp proximal
Rr628364	regulatory region 628364			903 bp proximal
Tssr55522	transcription start site region 55522			696 bp upstream
Tssr55523	transcription start site region 55523			731 bp upstream
Tssr55524	transcription start site region 55524			775 bp upstream
Tssr55525	transcription start site region 55525			833 bp upstream
Tssr55526	transcription start site region 55526			868 bp upstream